Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs12313385 | chr12:112292147 | C/G | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12314527 | chr12:112373089 | T/C | 6.93E-6 | 192 | 12.1 | 14.9 | 4.03 | KM Plot |
| LIHC | rs12316525 | chr12:112344119 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12319165 | chr12:112340734 | A/G | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12319315 | chr12:112341019 | A/C | 3.47E-6 | 186 | 12.1 | 15.83 | 5.17 | KM Plot |
| LIHC | rs12319539 | chr12:112272717 | G/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12321677 | chr12:112339015 | A/G | 6.38E-6 | 192 | 4.03 | 14.98 | 12.57 | KM Plot |
| LIHC | rs12322899 | chr12:112288202 | A/G | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12331055 | chr4:44692442 | A/C | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs12332043 | chr4:44690617 | A/T | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1234609 | chr5:96214217 | C/T | 1.81E-9 | 191 | 12.88 | 20.4 | 1.68 | KM Plot |
| LIHC | rs12423041 | chr12:112324846 | A/G | 3.56E-5 | 192 | 13.03 | 14.62 | 8.23 | KM Plot |
| LIHC | rs12423061 | chr12:112404895 | C/T | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs12423126 | chr12:112429469 | C/G | 5.39E-6 | 192 | 13.03 | 14.85 | 5.17 | KM Plot |
| LIHC | rs12426554 | chr12:112315102 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |